A FIELD GUIDE TO THE GENETIC CODE

Meet the amino acids.

Names, abbreviations, side-chain groups and the codons that connect them.

The 20 standard amino acids and their codons
Name3-letter1-letterSide-chain classCodons
AlanineAlaAnonpolar
ArginineArgRbasic
AsparagineAsnNpolar
Aspartic acidAspDacidic
CysteineCysCpolar
GlutamineGlnQpolar
Glutamic acidGluEacidic
GlycineGlyGnonpolar
HistidineHisHbasic
IsoleucineIleInonpolar
LeucineLeuLnonpolar
LysineLysKbasic
MethionineMetMnonpolar
PhenylalaninePheFnonpolar
ProlineProPnonpolar
SerineSerSpolar
ThreonineThrTpolar
TryptophanTrpWnonpolar
TyrosineTyrYpolar
ValineValVnonpolar
NonpolarPolarAcidicBasicStop

Standard code (NCBI table 1). Start-codon use depends on the organism and sequence context.

Names and abbreviations

Protein sequences usually use one-letter amino-acid codes. Three-letter abbreviations are useful when discussing individual residues: alanine is Ala or A, lysine is Lys or K, and tryptophan is Trp or W. The table above lists the 20 standard amino acids and the codons that specify them in the selected genetic code. Search by a full name, three-letter abbreviation or one-letter code to highlight matching codons.

These single letters describe amino acids, not nucleotide ambiguity codes. For example, R in a protein means arginine; R in a DNA sequence means either A or G. The alphabet and the kind of sequence matter. Use the DNA-to-protein tool when converting nucleotide letters into a protein sequence.

Side-chain groups

The chart uses a broad teaching classification: nonpolar, polar, acidic and basic. These groups describe common side-chain properties, rather than a complete prediction of a residue's behavior in a folded protein. Protonation depends on pH and local environment. Tyrosine and cysteine are placed in the polar group here; other teaching charts sometimes divide aromatic or sulfur-containing residues into separate categories.

Stop signals are not amino acids, so they do not occupy a row in this table. You can inspect them on the complete codon chart. The reference covers the usual 20-residue alphabet, rather than recoding rules for selenocysteine or pyrrolysine.

Why some amino acids have several codons

There are 64 possible three-base combinations, but only 20 standard amino acids. Multiple codons therefore map to the same residue in the standard code. The assignments are not identical in every genetic code: changing the NCBI table updates the codons beside each amino acid. A dagger marks context-dependent termination. Read the genetic-code guide before interpreting a sequence from an unfamiliar organism or organelle.